Hi All Thanks Nate for your response. It helped me solve my problem. I checked the log file in SGE. It kept on throwing a warning that "unable to find shell "/bin/csh" " I, then, installed csh using yum and then, voila, the jobs were getting submitted and run. Thanks a lot again... Akash -----Original Message----- From: Nate Coraor [mailto:nate@bx.psu.edu] Sent: Thursday, April 16, 2009 2:02 AM To: Akash Mohan Cc: galaxy-dev@bx.psu.edu Subject: Re: [galaxy-dev] Error while submitting a job to sge queue Akash Mohan wrote:
As I submit a job through the web ui I could trace that the job does get submitted to the queue. But however it fails with an error as below:
galaxy.jobs.runners.sge DEBUG 2009-04-14 08:36:09,252 (15/15) state change: job finished, but failed
Hi Akash, This state is provided by the scheduler itself. Have you ensured that you can run simple jobs from the command line as the Galaxy user? If so, can you check the SGE logs to see if anything is logged when the job fails? You might also want to check the contents of the job's output/error in the database/pbs/ directory. --nate DISCLAIMER ========== This e-mail may contain privileged and confidential information which is the property of Persistent Systems Ltd. It is intended only for the use of the individual or entity to which it is addressed. If you are not the intended recipient, you are not authorized to read, retain, copy, print, distribute or use this message. If you have received this communication in error, please notify the sender and delete all copies of this message. Persistent Systems Ltd. does not accept any liability for virus infected mails.