Thanks Nate for your response. It helped me solve my problem.
I checked the log file in SGE. It kept on throwing a warning that "unable to find
shell "/bin/csh" "
I, then, installed csh using yum and then, voila, the jobs were getting submitted and
Thanks a lot again...
From: Nate Coraor [mailto:email@example.com]
Sent: Thursday, April 16, 2009 2:02 AM
To: Akash Mohan
Subject: Re: [galaxy-dev] Error while submitting a job to sge queue
Akash Mohan wrote:
As I submit a job through the web ui I could trace that the job does
submitted to the queue. But however it fails with an error as below:
galaxy.jobs.runners.sge DEBUG 2009-04-14 08:36:09,252 (15/15) state
change: job finished, but failed
This state is provided by the scheduler itself. Have you ensured that
you can run simple jobs from the command line as the Galaxy user? If
so, can you check the SGE logs to see if anything is logged when the job
fails? You might also want to check the contents of the job's
output/error in the database/pbs/ directory.
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