Re: [galaxy-dev] BioBlend: getting a list of datasets in a folder
Since I'm adding files to data libraries anyway, I found I could get the
dataID when I uploaded the file e.g.
s = gi.libraries.upload_from_galaxy_filesystem(LibID,
os.path.join(folderLoc, fname), folder_id = subfolderID, file_type="fastq",
dbkey="?", link_data_only = "link_to_files")
dataID = (s[0])['id']
However, If I try to use this ID as the dataID to upload a dataset to a
history:
gi.histories.upload_dataset_from_library(historyID,
(s[0])['id'])
I get the error :
File
>
"/remote/home/galaxy-test2/.venv/lib/python2.7/site-packages/bioblend/galaxy/histories/__init__.py",
> line 342, in upload_dataset_from_library
return Client._post(self, payload, id=history_id, contents=True)
File
>
"/remote/home/galaxy-test2/.venv/lib/python2.7/site-packages/bioblend/galaxy/client.py",
> line 169, in _post
contents=contents)
File
>
"/remote/home/galaxy-test2/.venv/lib/python2.7/site-packages/bioblend/galaxyclient.py",
> line 64, in _make_url
c_url = '/'.join([c_url, module_id])
TypeError: sequence item 1: expected string, dict found
Any help would be greatly appreciated!!
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