That Galaxy version is quite old at this point. There were a couple fixes for the cleanup_job config handling over the last year that may have fixed the problem. I run with this option enabled daily and I have not seen any problems in months. If you can confirm this is still a problem with latest stable Galaxy instance - I would be definitely be eager to address any bugs.
-John
On Sun, Nov 30, 2014 at 5:43 PM, Pandori n pandorinpan@gmail.com wrote:
Hi all. Config:
- galaxy-dist stable (changeset: 11247:a9a0ac9c1afa) [Dec/18/2013]
- NFS
- Cluster (torque)
When i start my WF, on step 2, in 'job_working_directory' created temp (intermediate) dir (for tool step 3). But when step 2 is completed, temp dir (in 'job_working_directory') removed(via galaxy) and step 3 failed. In 'universe_wsgi.ini' 'cleanup_job = never'. Why galaxy.jobs deleted temp dir....?
Any help is appreciated. Thanks.
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