Hi all,
Excuse me for the newbie question. I am developing a local instance of galaxy to use primarily for teaching purposes. I would like to index bam files produced in galaxy in order to view them in IGV. I can't seem to find the samtools index tool in the toolshed. I can run samtools on the command line and generate indexes, but can find no way to add this functionality to the tool panel so that I can do it in Galaxy. I also can't find this functionality in the tool panel (under Samtools or BAM tools) on usegalaxy.org. Am I missing something? Do I need to write my own tool?
Regards, Eleanor
Eleanor Morgan Senior Scientific Officer | School of Biomedical Sciences | Faculty of Health Sciences
Curtin University Tel | +61 8 9266 7516 Mob | +61 408 004 369 Fax | +61 8 9266 2342 Email | e.morgan@curtin.edu.aumailto:e.morgan@curtin.edu.au Web | biomed.curtin.edu.au
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