details: http://www.bx.psu.edu/hg/galaxy/rev/20b319780138 changeset: 2908:20b319780138 user: Kanwei Li kanwei@gmail.com date: Wed Oct 21 23:15:22 2009 -0400 description: fix dataset link that broke ucsc links
4 file(s) affected in this change:
lib/galaxy/web/buildapp.py lib/galaxy/web/controllers/dataset.py templates/dataset/large_file.mako templates/root/history_common.mako
diffs (68 lines):
diff -r 0dd49ce8eb3e -r 20b319780138 lib/galaxy/web/buildapp.py --- a/lib/galaxy/web/buildapp.py Wed Oct 21 16:15:27 2009 -0400 +++ b/lib/galaxy/web/buildapp.py Wed Oct 21 23:15:22 2009 -0400 @@ -77,7 +77,7 @@ webapp.add_route( '/async/:tool_id/:data_id/:data_secret', controller='async', action='index', tool_id=None, data_id=None, data_secret=None ) webapp.add_route( '/:controller/:action', action='index' ) webapp.add_route( '/:action', controller='root', action='index' ) - webapp.add_route( '/datasets/:encoded_id/:action/:filename', controller='dataset', action='index', encoded_id=None, filename=None) + webapp.add_route( '/datasets/:dataset_id/:action/:filename', controller='dataset', action='index', dataset_id=None, filename=None) webapp.add_route( '/u/:username/p/:slug', controller='page', action='display_by_username_and_slug' ) webapp.finalize_config() # Wrap the webapp in some useful middleware diff -r 0dd49ce8eb3e -r 20b319780138 lib/galaxy/web/controllers/dataset.py --- a/lib/galaxy/web/controllers/dataset.py Wed Oct 21 16:15:27 2009 -0400 +++ b/lib/galaxy/web/controllers/dataset.py Wed Oct 21 23:15:22 2009 -0400 @@ -199,14 +199,14 @@ return 'This link may not be followed from within Galaxy.'
@web.expose - def display(self, trans, encoded_id=None, preview=False, filename=None, to_ext=None, **kwd): + def display(self, trans, dataset_id=None, preview=False, filename=None, to_ext=None, **kwd): """Catches the dataset id and displays file contents as directed"""
# DEPRECATION: We still support unencoded ids for backward compatibility try: - dataset_id = int( encoded_id ) + dataset_id = int( dataset_id ) except ValueError: - dataset_id = trans.security.decode_id( encoded_id ) + dataset_id = trans.security.decode_id( dataset_id ) data = trans.app.model.HistoryDatasetAssociation.get( dataset_id ) if not data: raise paste.httpexceptions.HTTPRequestRangeNotSatisfiable( "Invalid reference dataset id: %s." % str( dataset_id ) ) diff -r 0dd49ce8eb3e -r 20b319780138 templates/dataset/large_file.mako --- a/templates/dataset/large_file.mako Wed Oct 21 16:15:27 2009 -0400 +++ b/templates/dataset/large_file.mako Wed Oct 21 23:15:22 2009 -0400 @@ -2,8 +2,8 @@
<div class="warningmessagelarge"> This dataset is large and only the first megabyte is shown below.<br /> - <a href="${h.url_for( controller='dataset', action='display', encoded_id=trans.security.encode_id( data.id ), filename='' )}">Show all</a> | - <a href="${h.url_for( controller='dataset', action='display', encoded_id=trans.security.encode_id( data.id ), to_ext=data.ext )}">Save</a> + <a href="${h.url_for( controller='dataset', action='display', dataset_id=trans.security.encode_id( data.id ), filename='' )}">Show all</a> | + <a href="${h.url_for( controller='dataset', action='display', dataset_id=trans.security.encode_id( data.id ), to_ext=data.ext )}">Save</a> </div>
<pre> diff -r 0dd49ce8eb3e -r 20b319780138 templates/root/history_common.mako --- a/templates/root/history_common.mako Wed Oct 21 16:15:27 2009 -0400 +++ b/templates/root/history_common.mako Wed Oct 21 23:15:22 2009 -0400 @@ -33,7 +33,7 @@ <img src="${h.url_for('/static/images/pencil_icon_grey.png')}" width='16' height='16' alt='edit attributes' title='edit attributes' class='button edit' border='0'> %endif %else: - <a class="icon-button display" title="display data" href="${h.url_for( controller='dataset', action='display', encoded_id=trans.security.encode_id( data.id ), preview=True, filename='' )}" target="galaxy_main"></a> + <a class="icon-button display" title="display data" href="${h.url_for( controller='dataset', action='display', dataset_id=trans.security.encode_id( data.id ), preview=True, filename='' )}" target="galaxy_main"></a> %if user_owns_dataset: <a class="icon-button edit" title="edit attributes" href="${h.url_for( controller='root', action='edit', id=data.id )}" target="galaxy_main"></a> %endif @@ -87,7 +87,7 @@ <div class="info">${_('Info: ')}${data.display_info()}</div> <div> %if data.has_data: - <a href="${h.url_for( controller='dataset', action='display', encoded_id=trans.security.encode_id( data.id ), to_ext=data.ext )}">save</a> + <a href="${h.url_for( controller='dataset', action='display', dataset_id=trans.security.encode_id( data.id ), to_ext=data.ext )}">save</a> %if user_owns_dataset: | <a href="${h.url_for( controller='tool_runner', action='rerun', id=data.id )}" target="galaxy_main">rerun</a> %endif