On Sep 4, 2014, at 2:44 PM, Iry Witham Iry.Witham@jax.org wrote:
Hi Team,
I have upgraded to the latest galaxy distribution on my test server. Now I am running into issues and can't figure this one out. I am attempting to run the join.py tool to join two datasets at specified fields. I am getting the following error:
Traceback (most recent call last): File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/tools/filters/join.py", line 18, in <module> from galaxy.util.bunch import Bunch File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/__init__.py", line 95, in <module> import galaxy.eggs File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/eggs/__init__.py", line 5, in <module> import os, sys, shutil, glob, urllib, urllib2, ConfigParser, HTMLParser, zipimport, zipfile File "/usr/lib64/python2.6/urllib2.py", line 93, in <module> import hashlib File "/usr/lib64/python2.6/hashlib.py", line 88, in <module> import _hashlib ImportError: /usr/lib64/libssl.so.10: symbol EC_KEY_get0_group, version OPENSSL_1.0.1_EC not defined in file libcrypto.so.10 with link time reference Traceback (most recent call last): File "./scripts/set_metadata.py", line 29, in <module> from galaxy import eggs File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/__init__.py", line 95, in <module> import galaxy.eggs File "/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib/galaxy/eggs/__init__.py", line 5, in <module> import os, sys, shutil, glob, urllib, urllib2, ConfigParser, HTMLParser, zipimport, zipfile File "/usr/lib64/python2.6/urllib2.py", line 93, in <module> import hashlib File "/usr/lib64/python2.6/hashlib.py", line 88, in <module> import _hashlib ImportError: /usr/lib64/libssl.so.10: symbol EC_KEY_get0_group, version OPENSSL_1.0.1_EC not defined in file libcrypto.so.10 with link time reference
I am at a loss on the resolution for this.
Thanks, Iry
Hi Iry,
It looks like your libssl and libcrypto versions are out of sync. This shouldn't happen as both are provided by the OpenSSL packages for your OS (RHEL-based 6.x?), but I see that others have encountered similar problems:
https://www.centos.org/forums/viewtopic.php?f=14&t=44075
You might want to double check that your OpenSSL packages have not been replaced by versions from another source other than the official RHEL/CentOS core repositories.
--nate
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