I am running a local instance of galaxy, which has been functioning fine until 2 weeks ago.
However, now when I go to the Admin section, then to ‘Search and browse tool sheds’ and click ‘Galaxy main tool shed’ the browser waits for a while then I get a ‘Connection was reset’ error instead of it loading the repository list.
My galaxy source code is current (galaxy-central default branch) but the problem persists.
There is no error in the pastor.log, just the HTTP get request.
Using firebugs's Net monitor I see that the request headers are:
-----
GET /admin_toolshed/browse_tool_shed?tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F HTTP/1.1 Host: galaxy-dev.pfr.co.nz User-Agent: Mozilla/5.0 (Windows NT 6.1; WOW64; rv:22.0) Gecko/20100101 Firefox/22.0 Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8 Accept-Language: en-US,en;q=0.5 Accept-Encoding: gzip, deflate DNT: 1 Referer: http://galaxy-dev.pfr.co.nz/admin_toolshed/browse_tool_sheds Cookie: galaxysession=6b92569b51fb1f456359b57e01e74ed0870e5e1795387640f0c3bfaf4ef313aabbd45f06f75feeb3 Authorization: Basic aHJhYnh3OkdlaWdodDM5 Connection: keep-alive
----- And the response is ok:
HTTP/1.1 302 Found Date: Tue, 09 Jul 2013 03:31:54 GMT Server: PasteWSGIServer/0.5 Python/2.6.6 Content-Type: text/html; charset=UTF-8 Location: http://toolshed.g2.bx.psu.edu/repository/browse_valid_categories?galaxy_url=... Connection: close Transfer-Encoding: chunked
(Response body) Reload the page to get source for: http://galaxy-dev.pfr.co.nz/admin_toolshed/browse_tool_shed?tool_shed_url=ht...
----- But then the next request is aborted:
GET /repository/browse_valid_categories?galaxy_url=http://galaxy-dev.pfr.co.nz HTTP/1.1 Host: toolshed.g2.bx.psu.edu User-Agent: Mozilla/5.0 (Windows NT 6.1; WOW64; rv:22.0) Gecko/20100101 Firefox/22.0 Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8 Accept-Language: en-US,en;q=0.5 Accept-Encoding: gzip, deflate DNT: 1 Referer: http://galaxy-dev.pfr.co.nz/admin_toolshed/browse_tool_sheds Cookie: galaxycommunitysession=bbd44e69cb8906b5a39a9cdac7e07561173165e04e61ec5f385274c6a929ecc3b4da275f30092ddc; toolshedgalaxyurl= Connection: keep-alive
-----
Then the browser gives the 'The connection was reset' error. The Get request status is changed to 'Aborted'. There is no response
Also, my Galaxy instance is behind an http proxy, but all the proxy settings are as they should be (as described in the galaxy wiki).
Any ideas as to what could be causing the tool shed browser to fail to load?
Kind Regards
Ben Warren Research Technologist
F: +64 9 925 7001 ben.warren@plantandfood.co.nz www.plantandfood.co.nz The New Zealand Institute for Plant & Food Research Limited
Postal Address: Plant & Food Research Mt Albert Private Bag 92169, Auckland, 1142, New Zealand Physical Address: Plant & Food Research Mt Albert 120 Mt Albert Road, Sandringham, Auckland, 1025, New Zealand
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