details: http://www.bx.psu.edu/hg/galaxy/rev/ec59d6bcf827 changeset: 2511:ec59d6bcf827 user: Nate Coraor nate@bx.psu.edu date: Thu Jul 30 12:12:26 2009 -0400 description: Fix a problem introduced in db version 10 (MySQL's length limits prevent the creation of an index)
1 file(s) affected in this change:
lib/galaxy/model/migrate/versions/0011_v0010_mysql_index_fix.py
diffs (55 lines):
diff -r fab59b1e756d -r ec59d6bcf827 lib/galaxy/model/migrate/versions/0011_v0010_mysql_index_fix.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/lib/galaxy/model/migrate/versions/0011_v0010_mysql_index_fix.py Thu Jul 30 12:12:26 2009 -0400 @@ -0,0 +1,51 @@ +from sqlalchemy import * +from sqlalchemy.orm import * +from sqlalchemy.exceptions import * +from migrate import * +from migrate.changeset import * + +import datetime +now = datetime.datetime.utcnow + +import sys, logging +log = logging.getLogger( __name__ ) +log.setLevel(logging.DEBUG) +handler = logging.StreamHandler( sys.stdout ) +format = "%(name)s %(levelname)s %(asctime)s %(message)s" +formatter = logging.Formatter( format ) +handler.setFormatter( formatter ) +log.addHandler( handler ) + +# Need our custom types, but don't import anything else from model +from galaxy.model.custom_types import * + +metadata = MetaData( migrate_engine ) +db_session = scoped_session( sessionmaker( bind=migrate_engine, autoflush=False, transactional=False ) ) + +HistoryDatasetAssociationDisplayAtAuthorization_table = Table( "history_dataset_association_display_at_authorization", metadata, + Column( "id", Integer, primary_key=True ), + Column( "create_time", DateTime, default=now ), + Column( "update_time", DateTime, index=True, default=now, onupdate=now ), + Column( "history_dataset_association_id", Integer, ForeignKey( "history_dataset_association.id" ), index=True ), + Column( "user_id", Integer, ForeignKey( "galaxy_user.id" ), index=True ), + Column( "site", TrimmedString( 255 ) ) ) + +def upgrade(): + if migrate_engine.name == 'mysql': + # Load existing tables + metadata.reflect() + i = Index( "ix_hdadaa_history_dataset_association_id", HistoryDatasetAssociationDisplayAtAuthorization_table.c.history_dataset_association_id ) + try: + i.create() + except Exception, e: + log.debug( "Adding index 'ix_hdadaa_history_dataset_association_id' to table 'history_dataset_association_display_at_authorization' table failed: %s" % str( e ) ) + +def downgrade(): + if migrate_engine.name == 'mysql': + # Load existing tables + metadata.reflect() + i = Index( "ix_hdadaa_history_dataset_association_id", HistoryDatasetAssociationDisplayAtAuthorization_table.c.history_dataset_association_id ) + try: + i.drop() + except Exception, e: + log.debug( "Removing index 'ix_hdadaa_history_dataset_association_id' from table 'history_dataset_association_display_at_authorization' table failed: %s" % str( e ) )