Tiago, Some work is already in progress for that. Please see - http://wookoouk.github.io/galaxyFlavorGenerator/ - https://github.com/galaxyFlavorsGenerators/galaxyFlavorGenerator/ I don't believe it handles configuration of the cluster backend, but I'm sure that would be a good addition to the project. Ciao, Eric 2015-08-05 10:02 GMT-05:00 Tiago Rodrigues Antao <tra@popgen.net>:
On Tue, 4 Aug 2015 17:26:00 +0000 "Kandalaft, Iyad" <Iyad.Kandalaft@AGR.GC.CA> wrote:
As a supplement to Oksana's original inquiry, we, at AAFC, couple Galaxy to SGE and possibly a different grid engine in the future for job scheduling. The old-fashioned way of doing that is to unify storage path and UID/GID between the application server and cluster.
I am starting to warm of the idea of making a small web interface that asks for a few configuration options: 1. type of grid engine 2. desired docker/galaxy flavour (RNA, exome, WGS, ...) 3. ... (e.g. intial admin user and password)
and would pull Björn's relevant Dockerfile, patch it and generate a new one, tailored to the need of the user.
I think it is impossible to have a set of dockerfiles for all the desired configurations (think analysis flavours times number of cluster types - for example).
I will need to implement something like this very soon, and I would not mind to do it in a way that the community could reuse...
So comments would be appreciated... ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Eric Rasche Programmer II Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu