Hi John,
Fix confirmed - nice timing, I just finished my lunch break :)
Thanks!
Peter
On Tue, Feb 18, 2014 at 12:35 PM, John Chilton jmchilton@gmail.com wrote:
That should be fixed now, sorry about that.
-John
On Tue, Feb 18, 2014 at 6:07 AM, Peter Cock p.j.a.cock@googlemail.com wrote:
On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock p.j.a.cock@googlemail.com wrote:
Hi all,
I just updated my development server, and ran into what looks like a missing dependency:
$ ./run.sh ... galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all configured runner plugins galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner workers galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner workers Traceback (most recent call last): File
"/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in __init__ self.job_manager = manager.JobManager( self ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31, in __init__ self.job_handler = handler.JobHandler( app ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31, in __init__ self.dispatcher = DefaultJobDispatcher( app ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line
576,
in __init__ self.job_runners = self.app.job_config.get_job_runner_plugins( self.app.config.server_name ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line
496,
in get_job_runner_plugins rval[id] = runner_class( self.app, runner[ 'workers' ],
**runner.get(
'kwds', {} ) ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line 45, in __init__ self.client_manager = build_client_manager(**client_manager_kwargs) File
"/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
line 41, in build_client_manager return MessageQueueClientManager(**kwargs) File
"/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
line 89, in __init__ self.exchange = LwrExchange(self.url, self.manager_name) File
"/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
line 37, in __init__ raise Exception(KOMBU_UNAVAILABLE) Exception: Attempting to bind to AMQP message queue, but kombu
dependency
unavailable
$ hg summary parent: 13557:75b13d642f94 tip Allow LWR runner to publish/consume messages via message queue. branch: default commit: 9 modified, 240 unknown update: (current)
(Local modifications mostly extra logging lines; nothing which looked relevant here)
Regards,
Peter
Also (not unexpectedly) breaking my TravisCI tool tests, e.g. https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
Peter
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