Hello, I tried to install CEAS from testtoolshed, but I have recieved the below error from python_mysqldb (tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f)
The installation directory for this tool dependency had contents but the database had no record. The installation log may show this tool dependency to be correctly installed, but due to the missing database record it is now being set to Error.
I installed MariaDB 10.1 on Ubuntu 14.04 in the following way:
apt-key adv --recv-keys --keyserver hkp://keyserver.ubuntu.com:80 0xcbcb082a1bb943db add-apt-repository 'deb [arch=amd64,i386] http://mirror.aarnet.edu.au/pub/MariaDB/repo/10.1/ubuntu trusty main' apt-get update apt-get install mariadb-server libmariadbclient-dev
The INSTALLATION.log shows the following information: ... byte-compiling build/bdist.linux-x86_64/egg/MySQLdb/cursors.py to cursors.pyc creating stub loader for _mysql.so byte-compiling build/bdist.linux-x86_64/egg/_mysql.py to _mysql.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying MySQL_python.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying MySQL_python.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying MySQL_python.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt creating dist removing 'build/bdist.linux-x86_64/egg' (and everything under it) Creating /home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/lib/python/site.py Processing MySQL_python-1.2.5-py2.7-linux-x86_64.egg Copying MySQL_python-1.2.5-py2.7-linux-x86_64.egg to /home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/lib/python Adding MySQL-python 1.2.5 to easy-install.pth file
Installed /home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/lib/python/MySQL_python-1.2.5-py2.7-linux-x86_64.egg Processing dependencies for MySQL-python==1.2.5 Finished processing dependencies for MySQL-python==1.2.5 #############################################
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export PYTHONPATH=$PYTHONPATH:/home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/lib/python && python setup.py install --install-lib /home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/lib/python --install-scripts /home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/bin
STDERR zip_safe flag not set; analyzing archive contents...
What did I miss?
Thank you in advance.
Mic