Hi Evan,
just for completeness Marius is referring to these changes:
https://github.com/galaxyproject/galaxy/pull/4049
For testing you could also integrate these changes in your instance, but upgrading to an up-to-date version is a good idea anyways.
Best, Matthias
Hello Evan,
this looks suspiciously like a bug that Matthias Bernt has fixed on the development branch a while back. I have backported this to Galaxy release 17.01 and release 17.05.
If you update your galaxy branch to the latest commit it should work (or you should receive a more instructive error message).
Hope that helps, Marius
On 17 August 2017 at 18:32, evan clark eclark28@fau.edu wrote:
I just ran across an issue when attempting to load galaxy. I am not sure how to fix this issue or what could be causing it. Conda is installed properly.
File "/var/web_services/galaxy/lib/galaxy/webapps/galaxy/buildapp.py", line 58, in paste_app_factory app = galaxy.app.UniverseApplication( global_conf=global_conf, **kwargs ) File "/var/web_services/galaxy/lib/galaxy/app.py", line 113, in __init__ self._configure_toolbox() File "/var/web_services/galaxy/lib/galaxy/config.py", line 935, in _configure_toolbox self.toolbox = tools.ToolBox( tool_configs, self.config.tool_path, self ) File "/var/web_services/galaxy/lib/galaxy/tools/__init__.py", line 205, in __init__ app=app, File "/var/web_services/galaxy/lib/galaxy/tools/toolbox/base.py", line 1044, in __init__ self._init_dependency_manager() File "/var/web_services/galaxy/lib/galaxy/tools/toolbox/base.py", line 1057, in _init_dependency_manager self.dependency_manager = build_dependency_manager( self.app.config ) File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line 41, in build_dependency_manager dependency_manager = DependencyManager( **dependency_manager_kwds ) File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line 84, in __init__ self.dependency_resolvers = self.__build_dependency_resolvers( conf_file ) File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line 193, in __build_dependency_resolvers return self.__default_dependency_resolvers() File "/var/web_services/galaxy/lib/galaxy/tools/deps/__init__.py", line 201, in __default_dependency_resolvers CondaDependencyResolver(self), File "/var/web_services/galaxy/lib/galaxy/tools/deps/resolvers/conda.py", line 134, in __init__ self.disabled = not galaxy.tools.deps.installable. ensure_installed(conda_context, install_conda, self.auto_init) File "/var/web_services/galaxy/lib/galaxy/tools/deps/installable.py", line 77, in ensure_installed return ensure_installed(installable_context, auto_init) TypeError: ensure_installed() takes exactly 3 arguments (2 given)