Dear all,
I was wondering if anybody has seen the following error after installing
deeptools in the galaxy interface:
Fatal error: Exit code 1 ()
Traceback (most recent call last):
File
"/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools(a)2.5.1/bin/plotCoverage",
line 4, in <module>
from deeptools.plotCoverage import main
File
"/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools(a)2.5.1/lib/python3.6/site-packages/deeptools/plotCoverage.py",
line 15, in <module>
import deeptools.countReadsPerBin as countR
File
"/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools(a)2.5.1/lib/python3.6/site-packages/deeptools/countReadsPerBin.py",
line 9, in <module>
import deeptools.utilities
File
"/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools(a)2.5.1/lib/python3.6/site-packages/deeptools/utilities.py",
line 3, in <module>
import pysam
File
"/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools(a)2.5.1/lib/python3.6/site-packages/pysam/__init__.py",
line 5, in <module>
from pysam.libchtslib import *
ImportError: libbz2.so.1.0: cannot open shared object file: No such file or directory
Has anybody encountered this error before and were you able to resolve it?
Thanks and best regards,
Christopher Previti
--
*Dr. Christopher Previti*
Genomics and Proteomics Core Facility
High Throughput Sequencing (W190)
Bioinformatician
German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 580
69120 Heidelberg
Germany
Room: B2.102 (INF580/TP3)
Phone: +49 6221 42-4434
christopher.previti(a)dkfz.de <
http://www.dkfz.de/>
www.dkfz.de <
http://www.dkfz.de/>
Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
VAT-ID No.: DE143293537
Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die
Personen bestimmt, an die sie adressiert ist.
Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte
Informationen enthalten. Sollten Sie nicht
der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den
Absender und löschen Sie die Mitteilung.
Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist
untersagt.