From the syntax I can see pbs-python still uses a Python 2 style print, it will need updating for Python 3.
I suggest opening an issue on the repository, and seeing what the author says. I would guess the Python 2 to 3 changes will be fairly easy, but worry that there have been other changes to Galaxy in the meantime which would be more trouble for this PBS extension as it does not appear to have been updated for 6 years.
Peter
On Mon, Nov 9, 2020 at 5:34 AM Sandra Maksimovic sandra.maksimovic@mcri.edu.au wrote:
Hi,
Has anyone out there had any success installing the pbs_python module into a Python 3+ Galaxy installation? I run into the following issue when installing https://github.com/ehiggs/pbs-python as per the documentation.
# python setup.py install File "setup.py", line 68 print "Version: %s is not supported" %(PBS_VERSION) ^ SyntaxError: invalid syntax
I provide the PBS/Torque version via the PBS_PYTHON_INCLUDE_DIR environment variable but it doesn't seem to detect the version properly.
Thanks, Sandra
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