28 Sep
2013
28 Sep
'13
12:28 a.m.
I wanted to remove all the non-standard reads (reads from non-standard chromosomes) from a bam file. I used Slice bam and the bed file contained all of the chromosome lengths for chr1-22, x, and y. But all I get back in the bam file are the unaligned chromosomes.
What am I doing wrong?
Jean Jasinski