Hello,
Is it possible to load a unique gff file with the annotations of several chromosomes for my custom build in one step (one gff file)?
With the current version of galaxy, it seems that I can load a gff file referring only to one chromosome. That's pretty tedious to load 43 gff files separatly for my custom build...
If I try, I get this error:
Traceback (most recent call last): File "~/galaxy-dist/lib/galaxy/datatypes/converters/interval_to_fli.py", line 91, in main() File "~/galaxy-dist/lib/galaxy/datatypes/converters/interval_to_fli.py", line 30, in main for feature in read_unordered_gtf( open( in_fname, 'r' ) ): File "~/galaxy-dist/lib/galaxy/datatypes/util/gff_util.py", line 389, in read_unordered_gtf feature = GFFFeature( None, intervals=intervals ) File "~/galaxy-dist/lib/galaxy/datatypes/util/gff_util.py", line 65, in __init__ ( interval.chrom, self.chrom ) ) ValueError: interval chrom does not match self chrom: SAGS2 != SAGS1
Thanks
Yec'han
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Yec'han LAIZET Ingenieur Plateforme Genome Transcriptome Tel: 05 57 12 27 75 _________________________________ INRA-UMR BIOGECO 1202 Equipe Genetique 69 route d'Arcachon 33612 CESTAS ================================================