Jen, Thank you for the information. I am using galaxy cloud to try the trickster for one of the processed chipseq analysis. However, there is no visualization for the bed file created from galaxy. Meantime, I am having problem to get back to galaxy now. Here is the error message as below -- The proxy could not connect to the destination in time. URL: http://ec2-107-20-10-72.compute-1.amazonaws.com/cloud I have tried to re-launch the cloud instance, as well as directly access the DNS from aws, and keep getting the same error. Is this the bug? Please help to fix this since I have data there. Thanks! Kathryn From: Jennifer Jackson [mailto:jen@bx.psu.edu] Sent: Monday, May 13, 2013 6:18 PM To: Sun, Wenping [USA] Cc: galaxy-user@lists.bx.psu.edu Subject: [External] Re: [galaxy-user] Question on galaxy data visualization Hello Kathryn, Trackster is the primary data visualization tool and can be accessed by clicking on the mini graph icon within a dataset: [cid:image001.png@01CE5244.3D2016D0] or by going to "Visualization" in the upper menu bar and starting a new track browser. http://wiki.galaxyproject.org/Learn#Visualization If you are interested, for certain datasets, the icon will also offer other options: Circster and/or Scatterplot. The tool group "Graph/Display Data" has graphing tools and tools that prepare data to be visualized. The tool group "Motif Tools" has a sequence logo generator, and the groups " NGS: QC and manipulation" and " BEDTools" have more graphing tools. Hopefully this helps, Jen Galaxy team On 5/13/13 11:08 AM, Sun, Wenping [USA] wrote: Dear galaxy group, I have question on the data visualization from output of galaxy pipeline. Is there any ideogram tool inside of galaxy? Regards, Kathryn ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org
