This is odd - sorry.
I might be worth uninstalling and re-installing this in the tool shed admin options - in particular ensure you install tool dependencies and that this installation process succeeds.
Otherwise - it might be worth trying to put some debug statements in the fastq groomer tool to try to track down the problem. Here (https://gist.github.com/jmchilton/2d61f7ab81d99a0f02fc) is a diff to have that tool write out the run-time value PYTHONPATH to Galaxy's home directory - it might be worth running a job, finding the output, setting PYTHONPATH to that value on the compute node and attempting to just import it directly.
cd $HOME; python -c "import galaxy.sequences.fastq"
Out of curiosity - what job runner are you using (local, DRMAA, etc...)?
On Tue, Jul 1, 2014 at 4:50 AM, julie dubois firstname.lastname@example.org wrote:
Hi, I've this error message when I run groomer.
My local instance of galaxy runs on a python virtualenv (python 2.7) and I have make the latest update with : hg pull -u.
I've verified and this library is present in my galaxy-dist/lib/galaxy_utils/sequence directory.
I've found no other idea than the update on this forum to run groomer correctly, any other idea ?
Thanks. Julie ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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