29 Apr
2010
29 Apr
'10
10:03 a.m.
Steve Taylor wrote:
Yes it says:
galaxy.jobs.runners.sge DEBUG 2010-04-29 15:33:33,133 (136/1221) state change: job finished normally
but in Galaxy it still is showing it as running.
After this you should also see 'job 136 ended'. This means that Galaxy has finished all post-processing. If this never happens, please try enabling this option: use_heartbeat = True This will create two files: heartbeat.log heartbeat.log.nonsleeping Watching the latter will show what the threads are up to when this is happening. I suspect it's setting metadata, but this should tell us for sure. --nate
Steve