Hi Shaun,
Thanks for reporting this, I have just committed the fix. I will let you know if we add the read_name to the truncated output.
-K
On Tue, Aug 2, 2011 at 6:54 AM, SHAUN WEBB swebb1@staffmail.ed.ac.ukwrote:
Hi, I've noticed a bug in sam2interval.py.
There are a few indentation errors in the final lines of code. I think there should be an indent after:
if not ref_name == '*':And this whole if statement should be included in the for loop above.
Also, would you be able to add read_name to the truncated output (when not printing all fields). This makes downstream analysis a lot easier, e.g. looking at reads that map multiple times.
Thanks Shaun Webb
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