Hi guys,
(Sorry for showing up on this list so much, hopefully I'll get everything running soon!)
On our local galaxy install when I try to run MACS14 like this: http://snag.gy/RYBBN.jpg
we get this error:
Dataset generation errors
Dataset 74: MACS14 on data 29 and data 24 (peaks: bed)
Tool execution generated the following error message:
Traceback (most recent call last): File "/misc/local/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/cdd9791c0afa/macs14/macs14_wrapper.py", line 132, in <module> if __name__ == "__main__": main() File "/misc/local/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/cdd9791c0afa/macs14/macs14_wrapper.py", line 94, in main xls_to_interval( create_peak_xls_file, options['xls_to_interval']['peaks_file'], header = 'peaks file' ) File "/misc/local/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/ryo-tas/macs14/cdd9791c0afa/macs14/macs14_wrapper.py", line 40, in xls_to_interval fields[1] = str( int( fields[1] ) - 1 ) ValueError: invalid literal for int() with base 10: 'start'