details: http://www.bx.psu.edu/hg/galaxy/rev/517bd810a6b2 changeset: 3239:517bd810a6b2 user: Greg Von Kuster greg@bx.psu.edu date: Thu Jan 14 11:26:08 2010 -0500 description: Added from __future__ import division to the Filter tool and increased the version, and fixed the URL in the new bx_browser tool config.
diffstat:
tools/data_source/bx_browser.xml | 2 +- tools/stats/filtering.py | 2 ++ tools/stats/filtering.xml | 2 +- 3 files changed, 4 insertions(+), 2 deletions(-)
diffs (35 lines):
diff -r 5bc21675703c -r 517bd810a6b2 tools/data_source/bx_browser.xml --- a/tools/data_source/bx_browser.xml Thu Jan 14 10:24:37 2010 -0500 +++ b/tools/data_source/bx_browser.xml Thu Jan 14 11:26:08 2010 -0500 @@ -7,7 +7,7 @@ <tool name="BX main" id="bx_browser" tool_type="data_source"> <description>browser</description> <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> - <inputs action="http://main.genome-browser.bx.psu.edu/" check_values="false" method="get"> + <inputs action="http://main.genome-browser.bx.psu.edu/cgi-bin/hgTables" check_values="false" method="get"> <display>go to BX Browser $GALAXY_URL</display> <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> <param name="tool_id" type="hidden" value="bx_browser" /> diff -r 5bc21675703c -r 517bd810a6b2 tools/stats/filtering.py --- a/tools/stats/filtering.py Thu Jan 14 10:24:37 2010 -0500 +++ b/tools/stats/filtering.py Thu Jan 14 11:26:08 2010 -0500 @@ -2,8 +2,10 @@ # This tool takes a tab-delimited text file as input and creates filters on columns based on certain properties. # The tool will skip over invalid lines within the file, informing the user about the number of lines skipped.
+from __future__ import division import sys, re, os.path from galaxy import eggs + # Older py compatibility try: set() diff -r 5bc21675703c -r 517bd810a6b2 tools/stats/filtering.xml --- a/tools/stats/filtering.xml Thu Jan 14 10:24:37 2010 -0500 +++ b/tools/stats/filtering.xml Thu Jan 14 11:26:08 2010 -0500 @@ -1,4 +1,4 @@ -<tool id="Filter1" name="Filter"> +<tool id="Filter1" name="Filter" version="1.0.1"> <description>data on any column using simple expressions</description> <command interpreter="python"> filtering.py $input $out_file1 "$cond" ${input.metadata.columns} "${input.metadata.column_types}"