Deeps,
It does not appear that you have installed taxBuilder on your system. What commands did you use to compile it on your system?
If you type 'which taxBuilder' it should return no results (assuming installed incorrectly). You will need to 'make clean' then 'make all' then manually move the binary files it produces into some environmental $PATH.
Hope that helps,
-Adam
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu
On Fri, May 3, 2013 at 3:58 PM, Deepthi Thomas Kannanayakal < dtthomas@ucalgary.ca> wrote:
Hi Galaxy team,
I am having problems with taxonomy information fetching.(Metagenomic Analysses->Fetch taxonomic representation).
According to the following link
http://dev.list.galaxyproject.org/quot-Fetch-taxonomic-representation-quot-D...
I have installed libraries from https://bitbucket.org/natefoo/taxonomy I have installed them in my local directory(not in /usr/local). But I am still having problem
/bin/sh: taxBuilder: command not found
What am I missing here?
Thanks,
Deeps
*Deepthi Theresa Thomas Kannanayakal
Bioinformatics Database Specialist Sun Visual Genomic Centre, Suite 1150, Health Science Centre 3330 Hospital Drive NW Department of Biochemistry and Molecular Biology Faculty of Medicine, University of Calgary T2N 4N1 Calgary, Alberta, Canada**
*Ph: (403) - 210 6661 Fax: (403) - 210 9538*
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