Hi Lance,
I answered this in your previous email - here's the answer:
To make this work in the tool shed, make the static directory that contains the image file a relative path in the tool config. For example, your repository has the following structure:
htseq_count htseq-count.xml sam_fa_indices.loc.sample static/ images/ count_modes.png test-data/ tool_data_table_conf.xml.sample tool_dependencies.xml
The help section of your tool config should simply use a relative path to the image file ( in this case, just a a "." in front of the path to the image file )
.. image:: ./static/images/count_modes.png :width: 500
I believe that's all that is necessary.
Greg Von Kuster
On Mar 22, 2013, at 12:44 PM, Lance Parsons wrote:
For one of my tool wrappers (htseq-count) in the toolshed, I point to an image file in the Help section. At the moment, I'm including the image in the repository as static/imagescount_modes.png and pointing to it in the wrapper.xml file with ".. image:: /static/images/count_modes.png". However, the toolshed installation doesn't copy this file to the static directory of the galaxy install (which doesn't seem like a good idea anyway). Is there any way for me to include a static file and then point to that file in the help when the tool is installed automatically via the toolshed.. Thanks.
-- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University
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