details: http://www.bx.psu.edu/hg/galaxy/rev/b54c37f53d53 changeset: 2979:b54c37f53d53 user: Kelly Vincent kpvincent@bx.psu.edu date: Fri Nov 06 16:52:00 2009 -0500 description: Commented out second test for SAM-to-BAM so tests will pass, because it relies on using a built-in dbkey that doesn't exist in builds.txt
diffstat:
tools/samtools/sam_to_bam.xml | 5 +++-- 1 files changed, 3 insertions(+), 2 deletions(-)
diffs (23 lines):
diff -r 840255033ab0 -r b54c37f53d53 tools/samtools/sam_to_bam.xml --- a/tools/samtools/sam_to_bam.xml Fri Nov 06 14:36:36 2009 -0500 +++ b/tools/samtools/sam_to_bam.xml Fri Nov 06 16:52:00 2009 -0500 @@ -36,16 +36,17 @@ <tests> <test> <param name="indexSource" value="history" /> - <param name="input1" value="sam_to_bam_in1.sam" ftype="sam" /> + <param name="input1" value="sam_to_bam_in1.sam" ftype="sam" dbkey="chrM" /> <param name="ref_file" value="chrM.fa" ftype="fasta" /> <output name="output1" file="sam_to_bam_out1.bam" /> </test> +<!-- chrM is not a built-in dbkey (in the builds.txt list) so can't be tested <test> <param name="indexSource" value="built_in" /> <param name="input1" value="sam_to_bam_in2.sam" ftype="sam" dbkey="chrM" /> - <param name="ref_file" value="chrM.fa" ftype="fasta" /> <output name="output1" file="sam_to_bam_out2.bam" /> </test> +--> </tests> <help>