Hi,
according to https://planemo.readthedocs.io/en/latest/writing_how_do_i.html#check-input-t... and https://bitbucket.org/galaxy/galaxy-central/pull-requests/457/allow-cheetah-...
there is simple function for data type checking: is_of_type()
after running job is not prepared and fail with:
galaxy.jobs.runners ERROR 2016-06-19 18:46:16,257 (66) Failure preparing job Traceback (most recent call last): File "/home/galaxy/lib/galaxy/jobs/runners/__init__.py", line 169, in prepare_job job_wrapper.prepare() File "/home/galaxy/lib/galaxy/jobs/__init__.py", line 889, in prepare self.command_line, self.extra_filenames, self.environment_variables = tool_evaluator.build() File "/home/galaxy/lib/galaxy/tools/evaluation.py", line 445, in build raise e NotFound: cannot find 'is_of_type' while searching for 'is_of_type'
where part of wrapper with is_of_type() is:
<command> <![CDATA[ #if $reads.is_of_type('fastq'): ln -s "$reads" rInput1.fq && #set $reads = 'rInput1.fq' #end if ...
where am I wrong? Or that is a Galaxy bug? Galxy is 16.04 and is_of_type() function is defined in lib/galaxy/tools/wrappers.py
Thanx, Nikolaos