Hi Bjorn , thanks for reply ...my problem has solved ...it's working now .. regards shashi ________________________________ From: Björn Grüning <bjoern.gruening@pharmazie.uni-freiburg.de> To: shashi shekhar <me_shashi29@yahoo.co.in> Cc: Peter Cock <p.j.a.cock@googlemail.com>; Galaxy Dev <galaxy-dev@bx.psu.edu> Sent: Tuesday, 25 June 2013 9:44 PM Subject: Re: [galaxy-dev] How to enable auto option for newly added file formats Am Dienstag, den 25.06.2013, 19:15 +0800 schrieb shashi shekhar:
Hi Björn,
Thanks Björn for the reply ,
But pdb file format is working not working auto option ..it works with by selecting PDB file format option in galaxy ... do i have to modify any registry.py file or any other file ? i have included only init ,init_meta and sniff function in PDB ( txt ) in data.py file ..
Yes you have to modify the registry.py file. And you need to take care of the order of registered sniffers, these are crucial. Or you just install these data types from my tool shed repository :) Cheers, Bjoern
Regards shahsi
______________________________________________________________________ From: Björn Grüning <bjoern.gruening@pharmazie.uni-freiburg.de> To: shashi shekhar <me_shashi29@yahoo.co.in> Cc: Peter Cock <p.j.a.cock@googlemail.com>; Galaxy Dev <galaxy-dev@bx.psu.edu> Sent: Tuesday, 25 June 2013 3:40 PM Subject: Re: [galaxy-dev] How to enable auto option for newly added file formats
Hi Shashi,
can you try my molecule datatype repository?
http://testtoolshed.g2.bx.psu.edu/view/bgruening/chemical_datatypes
The source is here: https://github.com/bgruening/galaxytools/blob/master/chemicaltoolbox/datatyp...
I have also a PDB definition inluded maybe that works for you and we can join the effort.
Thanks, Bjoern
Hi, yeah i followd this tutorial .. http://wiki.galaxyproject.org/Admin/Datatypes/Adding%20Datatypes
yeah ,i have tested my sniff methods .it works fine .when i upload any pdb file by using the option file format (PDB ) , it works but with auto option it doesnot work ........ regards shashi
______________________________________________________________________
From: Peter Cock <p.j.a.cock@googlemail.com> To: shashi shekhar <me_shashi29@yahoo.co.in> Cc: Galaxy Dev <galaxy-dev@bx.psu.edu> Sent: Tuesday, 25 June 2013 1:14 PM Subject: Re: [galaxy-dev] How to enable auto option for newly added file formats
On Tue, Jun 25, 2013 at 8:28 AM, shashi shekhar <me_shashi29@yahoo.co.in> wrote:
Hi,
yeah ..it is same thing... but i followed the galaxy -datatype(how to add new file format)tutorial ..but still my newly added file format is not working with auto option ....it always display txt format ..it is similar to txt format with some specific property ..
Reagrds shashi
So you've followed this: http://wiki.galaxyproject.org/Admin/Datatypes/Adding%20Datatypes
Have you tested your sniff method works? Have you checked the order the file types are tested?
Peter
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