Hi Bjorn ,
thanks for reply ...my problem has solved ...it's working now ..
regards shashi
________________________________ From: Björn Grüning bjoern.gruening@pharmazie.uni-freiburg.de To: shashi shekhar me_shashi29@yahoo.co.in Cc: Peter Cock p.j.a.cock@googlemail.com; Galaxy Dev galaxy-dev@bx.psu.edu Sent: Tuesday, 25 June 2013 9:44 PM Subject: Re: [galaxy-dev] How to enable auto option for newly added file formats
Am Dienstag, den 25.06.2013, 19:15 +0800 schrieb shashi shekhar:
Hi Björn,
Thanks Björn for the reply ,
But pdb file format is working not working auto option ..it works with by selecting PDB file format option in galaxy ... do i have to modify any registry.py file or any other file ? i have included only init ,init_meta and sniff function in PDB ( txt ) in data.py file ..
Yes you have to modify the registry.py file. And you need to take care of the order of registered sniffers, these are crucial.
Or you just install these data types from my tool shed repository :)
Cheers, Bjoern
Regards shahsi
From: Björn Grüning bjoern.gruening@pharmazie.uni-freiburg.de To: shashi shekhar me_shashi29@yahoo.co.in Cc: Peter Cock p.j.a.cock@googlemail.com; Galaxy Dev galaxy-dev@bx.psu.edu Sent: Tuesday, 25 June 2013 3:40 PM Subject: Re: [galaxy-dev] How to enable auto option for newly added file formats
Hi Shashi,
can you try my molecule datatype repository?
http://testtoolshed.g2.bx.psu.edu/view/bgruening/chemical_datatypes
The source is here: https://github.com/bgruening/galaxytools/blob/master/chemicaltoolbox/datatyp...
I have also a PDB definition inluded maybe that works for you and we can join the effort.
Thanks, Bjoern
Hi, yeah i followd this tutorial .. http://wiki.galaxyproject.org/Admin/Datatypes/Adding%20Datatypes
yeah ,i have tested my sniff methods .it works fine .when i upload any pdb file by using the option file format (PDB ) , it works but with auto option it doesnot work ........ regards shashi
From: Peter Cock p.j.a.cock@googlemail.com To: shashi shekhar me_shashi29@yahoo.co.in Cc: Galaxy Dev galaxy-dev@bx.psu.edu Sent: Tuesday, 25 June 2013 1:14 PM Subject: Re: [galaxy-dev] How to enable auto option for newly added file formats
On Tue, Jun 25, 2013 at 8:28 AM, shashi shekhar me_shashi29@yahoo.co.in wrote:
Hi,
yeah ..it is same thing... but i followed the galaxy
-datatype(how
to add
new file format)tutorial ..but still my newly added file format
is
not
working with auto option ....it always display txt format ..it is
similar to
txt format with some specific property ..
Reagrds shashi
So you've followed this: http://wiki.galaxyproject.org/Admin/Datatypes/Adding%20Datatypes
Have you tested your sniff method works? Have you checked the order the file types are tested?
Peter
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