Hi all,
Searching on the main Tool Shed for fastqc gives two conflicting tools, an older version from the IUC, and a newer version from the devteam.
If no one objects, I would like to mark the older IUC entry as deprecated, and edit the description to refer to the more up to date devteam entry instead.
Regards,
Peter
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https://toolshed.g2.bx.psu.edu/view/iuc/fastqc "FastQC wrapper" Containing one tool, "FastQC: Comprehensive QC" (version 0.53)
This has an internal tool_dependencies.xml file to install v0.10.1 (rather than using a Tool Shed package).
I can't find this tool on the IUC GitHub, https://github.com/galaxyproject/tools-iuc
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https://toolshed.g2.bx.psu.edu/view/devteam/fastqc "Read QC reports using FastQC" Containing one tool, "FastQC" (version 0.63)
This has a tool_dependencies.xml pointing at the v0.11.2 package, and previously used the older v0.10.1 package:
https://toolshed.g2.bx.psu.edu/view/devteam/package_fastqc_0_10_1 https://toolshed.g2.bx.psu.edu/view/devteam/package_fastqc_0_11_2
This tool's development is here: https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc