One of our researchers asked how to move result files from "Barcode Splitter" html links into his history. I thought this should be able to be done directly using dynamic multiple outputs: ( https://bitbucket.org/galaxy/galaxy-central/wiki/ToolsMultipleOutput ).
In my local copy of "Barcode Splitter" ( tools/fastx_toolkit/fastx_barcode_splitter.xml ), I've added a param to select barcodes for which to create new datasets in the history:
<param name="barcodes" type="select" multiple="true" label="Select barcodes to add as new datasets to history"> <options from_dataset="BARCODE"> <column name="name" index="0"/> <column name="value" index="0"/> <filter type="unique_value" name="unq_bc" column="0" /> <filter type="add_value" name="unmatched" value="unmatched"/> </options> </param>
There is a new script to handle the new param and create new datasets: tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.py
Would you be interested in those changes for the main codebase?
Jim Johnson University of Minnesota Supercomputing Institute 117 Pleasant St. SE Minneapolis, MN 55455 Email: jj@umn.edu