Dear Galaxy Developers,
I would like to have this tool integrated into Galaxy. It is similar to SignalP, however, where SignalP predict conventional secretion / membrane integration, SecretomeP predicts unconventional secretion. More information is in the attached paper.
A browser-version of SecretomeP v2.0 is available at http://www.cbs.dtu.dk/services/SecretomeP/ However, it is restricted to 100 uploaded sequences, so processing of large datasets is tedious. Therefore, integration into Galaxy would be great!
A portable version of SecretomeP exists and is available here: http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?secretomep It is only v1.0, but the difference between the versions is minimal (see also attached email of the developers).
There is one caveat: SecretomeP can deal with sequences only up to 4,000 amino acids (I am not sure, if including or excluding the 4,000). It would be great to integrate a small preselection to sort out longer sequences into the Galaxy tool.
Kind regards, Florian Sigloch
P.S.: I am currently writing up my PhD thesis and I am short on time. Would it be possible to integrate SecretomeP in 2-4 weeks? Pleeeeease? P.P.S.: I have been in contact with Dr. Björn Grüning about this, but I do not want to bother him during his current trip to the US.