On Tue, Jul 26, 2011 at 8:16 PM, Luobin Yang yangluob@isu.edu wrote:
I benchmarked MrBayes 3.1.2 program on my cluster for two cases:
- use local /tmp for temporary files
- use the network shared /home/galaxy/galaxy-dist/database/tmp
MrBayes is about 10 times slower for case 2 than for case 1. What I did was to set the network shared folder as the default but in the MrBayes wrapper, I changed the environment variable TEMP to be a local folder. Luobin
Does that mean Galaxy will configure the TEMP environment variable for tools to point at the universe_wsgi.ini new_file_path setting? In your case, /home/galaxy/galaxy-dist/database/tmp
This is the kind of thing I think should be documented somewhere for tool authors.
Thanks
Peter