Hello Galaxy team, Mainly the wiki on the local setup of NGS is a bit uncomplete. The download links to the built indexes do not seem to function on http://bitbucket.org/galaxy/galaxy-central/wiki/NGSLocalSetup My box somehow can't make the index files with BWA. This is probably due to memory shortage al though the tool does not specify. The tool just tells me: $ ./bwa index -a bwtsw -p test /home/muiser/data/Human_data/hg18/chromosomes/hg18.fa [bwa_index] fail to open file '/home/muiser/data/Human_data/hg18/chromosomes/hg18.fa'. Abort! Aborted It would be great if the files can be downloaded somewhere. Greetings, Iwe -- Iwe EC Muiser Master student NTNU - Department of Cancer Research and Molecular Medicine Bioinformatics & Gene Regulation Group Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Trondheim +4594157082