no - not a typo. The tool can process both. It's just my naming, because I use it for fastq. I'll change the help tag. 2015-06-25 3:44 GMT-05:00 Peter Cock <p.j.a.cock@googlemail.com>:
Hi Alexander,
If this wasn't a collection, I would expect format_source to work (possibly also using metadata_source="fastq_input1"), so perhaps this is a bug - John?
Peter
P.S. Your help caption and output label both say FASTQ, but the input also allows FASTA input. Typo?
On Thu, Jun 25, 2015 at 2:39 AM, Alexander Vowinkel <vowinkel.alexander@gmail.com> wrote:
Hi,
I have an input, that can be fasta,fastqsanger,fastqillumina:
<param name="fastq_input1" type="data" format="fasta,fastqsanger,fastqillumina" label="Select the fastq file" help="Specify fastq file with reads"/>
I have multiple outputfiles - bundled in a list collection:
<collection name="split_output" type="list" label="@OUTPUT_NAME_PREFIX@ on ${on_string} (Fastq Collection)" format_source="fastq_input1"> <discover_datasets pattern="__name_and_ext__" directory="splits" /> </collection>
The format_source parameter doesn't work - the files in the list (extension fq) are of format "fq"
How can I make it possible that they are fasta,fastqsanger,fastqillumina depending on fastq_input1?
Thanks, Alexander
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