On Tue, Mar 15, 2016 at 2:21 PM, John Chilton email@example.com wrote:
If you are running jobs as "the real user" with drmaa (using the chown script) - you will probably want to setup a separate job destination using the local runner for upload jobs. The upload tool uses files that are created outside of Galaxy and these aren't modeled well.
Does this help?
We found the opposite - if using "the real user", the Galaxy v16.01 would do a chown on the datafiles for DRMAA jobs (good) but also for local jobs (bad):
I will reply on that thread now with an update...