On Tue, Mar 15, 2016 at 2:21 PM, John Chilton jmchilton@gmail.com wrote:
If you are running jobs as "the real user" with drmaa (using the chown script) - you will probably want to setup a separate job destination using the local runner for upload jobs. The upload tool uses files that are created outside of Galaxy and these aren't modeled well.
Does this help?
-John
We found the opposite - if using "the real user", the Galaxy v16.01 would do a chown on the datafiles for DRMAA jobs (good) but also for local jobs (bad):
http://dev.list.galaxyproject.org/external-chown-script-py-and-the-local-job...
I will reply on that thread now with an update...
Peter