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I'm at a bit of a loss here, I've found that when I have a GFF file, it offers to be visualized, but I cannot figure out how to visualize on a Fasta file in my history.
I've done the following
1. GFF3 output file -> trackster 2. New viz 3. Build not listed -> click to add build from a fasta file (my genome) 4. Back to new viz, reference genome selected as the one I created.
Now I'm faced with this error:
Error: The requested genome file (/home/galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len) could not be opened. Exiting! sort: write failed: standard output: Broken pipe sort: write error Couldn't open /home/galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len , No such file or directory
Am I *only* able to viz. gff files on UCSC chromosomes?
It seems a bit obtuse when I have GFF data sets related to fasta phage genomes that I'm working with, all of which were uploaded/generated in galaxy.
Is there any (preferrably easy) way to accomplish this?
Cheers, Eric
- -- Eric Rasche Programmer II Center for Phage Technology Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu rasche.eric@yandex.ru