Hello Galaxy Buddies,
I am having a problem with run.sh core dumping. It happens when I try to view data (click on the eye) for a large text file of results. It doesn't happen when viewing data of a smaller size and it executes jobs fine.
Here is the server's output.
Starting server in PID 30831. serving on http://127.0.0.1:8000 127.0.0.1 - - [05/Apr/2013:15:08:26 -0400] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Linux x86_64; rv:10.0.11) Gecko/20121116 Firefox/10.0.11" 127.0.0.1 - - [05/Apr/2013:15:08:26 -0400] "GET /root/tool_menu HTTP/1.1" 200 - "http://localhost:8000/" "Mozilla/5.0 (X11; Linux x86_64; rv:10.0.11) Gecko/20121116 Firefox/10.0.11" 127.0.0.1 - - [05/Apr/2013:15:08:26 -0400] "GET /history HTTP/1.1" 200 - "http://localhost:8000/" "Mozilla/5.0 (X11; Linux x86_64; rv:10.0.11) Gecko/20121116 Firefox/10.0.11" 127.0.0.1 - - [05/Apr/2013:15:08:27 -0400] "GET /history/get_display_application_links HTTP/1.1" 200 - "http://localhost:8000/history" "Mozilla/5.0 (X11; Linux x86_64; rv:10.0.11) Gecko/20121116 Firefox/10.0.11" 127.0.0.1 - - [05/Apr/2013:15:08:30 -0400] "GET /datasets/1e8ab44153008be8/display/?preview=True HTTP/1.1" 200 - "http://localhost:8000/history" "Mozilla/5.0 (X11; Linux x86_64; rv:10.0.11) Gecko/20121116 Firefox/10.0.11" run.sh: line 78: 30831 Segmentation fault (core dumped) python ./scripts/paster.py serve universe_wsgi.ini $@ [jje16@rgs06 galaxy-dist]$
I am running Galaxy on Red Hat Linux under the most recent stable build. If it matters, it submits jobs to a cluster using the drmaa job runner.
[jje16@rgs06 galaxy-dist]$ hg summary parent: 9232:9264cf7148c0 Added tag release_2013.04.01 for changeset 75f09617abaa branch: stable commit: 85 unknown (clean) update: (current) [jje16@rgs06 galaxy-dist]$
any ideas on where to look?
thanks much,
Jason
Jason Evans jason.j.evans@gmail.com