On Apr 4, 2012, at 2:44 PM, Aaron Gallagher wrote:
On Apr 4, 2012, at 11:35 AM, Langhorst, Brad wrote:
This is somewhat akin to the reference area galaxy uses to store reference sequences (and their various indices, formats, annotations etc). It might be possible to modify galaxy's reference infrastructure to present these pre-built reference packages in the same way a user chooses hg19, or E. coli K12. The parse JSON option looks easier to me
This seems like something I should look into, at least. These don't come with Galaxy, do they?
No, one installs those references independently. see http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup specifically the section on reference genomes .
The more I think about this, the more i think it might make sense to explore setting up you own loc file - might not be that tough. I've never done that, so maybe somebody else who knows more about this will comment on that.
Brad
-- Brad Langhorst langhorst@neb.com 978-380-7564