Hi all,
Multiple users of our internal Galaxy server have reported with multiple browsers that tabular data is not displayed in the main central panel. The preview in the history works, but clicking on the "eye" icon gives a blank page.
I can confirm this in Firefox 24.0 and Safari 6.0.5, the HTML for the central frame looks blank but is actually a script when viewed via the frame source. The tabular file data is there in the script's first_data_chunk entry - but does not get shown. An except is shown below.
Has anyone else noticed this problem? I believe it began when I last updated this Galaxy instance, but was not noticed immediately.
Thanks,
Peter
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I believe we are running the current stable release, or at least the latest commit on the default branch from galaxy-dist
$ hg pull warning: bitbucket.org certificate with fingerprint 24:9c:45:8b:9c:aa:ba:55:4e:01:6d:58:ff:e4:28:7d:2a:14:ae:3b not verified (check hostfingerprints or web.cacerts config setting) real URL is https://bitbucket.org/galaxy/galaxy-dist pulling from http://bitbucket.org/galaxy/galaxy-dist searching for changes no changes found
$ hg update 0 files updated, 0 files merged, 0 files removed, 0 files unresolved
$ hg branch default
[galaxy@ppserver galaxy-dist]$ hg log -b default | head changeset: 10411:c42567f43aa7 user: greg date: Mon Aug 19 13:19:56 2013 -0400 summary: Filter invalid objects when generating the list of repository_dependencies objects that are associated with a tool shed repository installed into Galaxy.
changeset: 10410:e9ee9c5d30ae user: Dave Bouvier dave@bx.psu.edu date: Mon Aug 19 13:08:45 2013 -0400 summary: Remove duplicate method from the install and test's functional_tests.py. ...
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<!DOCTYPE HTML> <html> <!--base.mako--> <head> <title>Dataset Display</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<link href="/galaxy/static/style/base.css?v=1380731103" media="screen" rel="Stylesheet" type="text/css" />
<script src="/galaxy/static/scripts/libs/jquery/jquery.js?v=1380731103" type="text/javascript"></script> <script src="/galaxy/static/scripts/libs/jquery/jquery.migrate.js?v=1380731103" type="text/javascript"></script> <script src="/galaxy/static/scripts/libs/jquery/select2.js?v=1380731103" type="text/javascript"></script> <script src="/galaxy/static/scripts/libs/bootstrap.js?v=1380731103" type="text/javascript"></script> <script src="/galaxy/static/scripts/libs/underscore.js?v=1380731103" type="text/javascript"></script> <script src="/galaxy/static/scripts/libs/backbone/backbone.js?v=1380731103" type="text/javascript"></script> <script src="/galaxy/static/scripts/libs/backbone/backbone-relational.js?v=1380731103" type="text/javascript"></script> <script src="/galaxy/static/scripts/libs/handlebars.runtime.js?v=1380731103" type="text/javascript"></script> <script src="/galaxy/static/scripts/galaxy.base.js?v=1380731103" type="text/javascript"></script>
<script src="/galaxy/static/scripts/templates/compiled/template-popupmenu-menu.js?v=1380731103" type="text/javascript"></script>
<script src="/galaxy/static/scripts/mvc/ui.js?v=1380731103" type="text/javascript"></script>
<script type="text/javascript"> // console protection window.console = window.console || { log : function(){}, debug : function(){}, info : function(){}, warn : function(){}, error : function(){}, assert : function(){} };
// Set up needed paths. var galaxy_paths = new GalaxyPaths({ root_path: '/galaxy/', image_path: '/galaxy/static/images' }); </script>
<script src="/galaxy/static/scripts/libs/require.js?v=1380731103" type="text/javascript"></script> <script src="/galaxy/static/scripts/templates/compiled/helpers-common-templates.js?v=1380731103" type="text/javascript"></script>
<script type="text/javascript"> require.config({ baseUrl: "/galaxy/static/scripts", shim: { "libs/backbone/backbone": { exports: "Backbone" }, "libs/backbone/backbone-relational": ["libs/backbone/backbone"] } });
require(['mvc/data'], function(data) { data.createTabularDatasetChunkedView( _.extend( {"misc_blurb": "7,891 lines", "peek": "<table cellspacing="0" cellpadding="3"><tr><th>1</th><th>2</th><th>3</th></tr><tr><td>Gpa_EST_02_04___C05_022</td><td>GO:0005737</td><td>...</td></tr></table>", "data_type": "tabular", "deleted": false, "history_id": "cdbf837ba6516a14", "metadata_column_names": null, "visible": true, "genome_build": "?", "hid": 10, "file_size": 509095, "metadata_data_lines": 7891, "file_ext": "tabular", "id": "0ddcd2cf2375e24a", "misc_info": "\nBLASTX output identified\nInput has 4507 queries\nDone\nStandard out:\nBlast2GO Pipeline Version 2.5.0\n--------------------------------------\n\nHash for resource ec2go_19072011.txt of type ec created. 4003 associations loaded.\nBlast2GO build: 23092011\nChange ", "hda_ldda": "hda", "name": "Blast2GO Local database (May 2011)", "metadata_columns": 3, "uuid": null, "state": "ok", "metadata_comment_lines": null, "model_class": "HistoryDatasetAssociation", "metadata_dbkey": "?", "purged": false, "metadata_column_types": ["str", "str", "str"]}, { url_viz: "/galaxy/visualization", chunk_url: "/galaxy/dataset/display?dataset_id=0ddcd2cf2375e24a", first_data_chunk: {"ck_index": 1, "ck_data": "Gpa_EST_02_04___C05_022\tGO:0005737\tn-dimethylarginine dimethylaminohydrolase\n...\n"} } ), // Append view to body. $('body') ); }); </script>
</head> <body>
</body> </html>
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