Hi, I have added a few tools in the galaxy.For one of these tools it sometime gives an error. but everytime I execute this tool it renders this exception on console. Can anybody please help me fix it. galaxy.jobs DEBUG 2010-05-21 14:30:03,166 dispatching job 203 to sge runner galaxy.jobs.runners.sge ERROR 2010-05-21 14:30:03,508 failure running job 203 Traceback (most recent call last): File "/export/home/galaxy/galaxy-dist/lib/galaxy/jobs/runners/sge.py", line 120, in queue_job job_wrapper.prepare() File "/export/home/galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py", line 390, in prepare self.command_line = self.tool.build_command_line( param_dict ) File "/export/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py", line 1343, in build_command_line command_line = fill_template( self.command, context=param_dict ) File "/export/home/galaxy/galaxy-dist/lib/galaxy/util/template.py", line 9, in fill_template return str( Template( source=template_text, searchList=[context] ) ) File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Template.py", line 1244, in __init__ self._compile(source, file, compilerSettings=compilerSettings) File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Template.py", line 1538, in _compile keepRefToGeneratedCode=True) File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Template.py", line 745, in compile compiler.compile() File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Compiler.py", line 1670, in compile self._parser.parse() File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Parser.py", line 1488, in parse self.eatDirective() File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Parser.py", line 1610, in eatDirective directiveParser() File "/export/home/galaxy/galaxy-dist/eggs/Cheetah-2.2.2-py2.4-linux-x86_64-ucs4.egg/Cheetah/Parser.py", line 1755, in eatEndDirective raise ParseError(self, msg='Invalid end directive') ParseError: Invalid end directive Line 3, column 6 Line|Cheetah Code ----|------------------------------------------------------------- 2 | #else: #gkelvin $confile.nonmeta 3 | #end ^ 4 | galaxy.jobs DEBUG 2010-05-21 14:30:03,509 job 203 dispatched Regards, Amit Modi ----------------------------------------- Confidentiality Notice: The following mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information. The recipient is responsible to maintain the confidentiality of this information and to use the information only for authorized purposes. If you are not the intended recipient (or authorized to receive information for the intended recipient), you are hereby notified that any review, use, disclosure, distribution, copying, printing, or action taken in reliance on the contents of this e-mail is strictly prohibited. If you have received this communication in error, please notify us immediately by reply e-mail and destroy all copies of the original message. Thank you.