Thanks Peter, that's really helpful. I'm glad we're not the only ones running into this.
-Rob
Rob Lemley Systems Administrator – CIRC University of Rochester
-----Original Message----- From: Peter Cock [mailto:p.j.a.cock@googlemail.com] Sent: Tuesday, March 15, 2016 10:34 AM To: John Chilton jmchilton@gmail.com Cc: Lemley, Rob rob.lemley@rochester.edu; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Problems uploading files to galaxy
On Tue, Mar 15, 2016 at 2:21 PM, John Chilton jmchilton@gmail.com wrote:
If you are running jobs as "the real user" with drmaa (using the chown script) - you will probably want to setup a separate job destination using the local runner for upload jobs. The upload tool uses files that are created outside of Galaxy and these aren't modeled well.
Does this help?
-John
We found the opposite - if using "the real user", the Galaxy v16.01 would do a chown on the datafiles for DRMAA jobs (good) but also for local jobs (bad):
https://urldefense.proofpoint.com/v2/url?u=http-3A__dev.list.galaxyproject.o...
I will reply on that thread now with an update...
Peter