[galaxy-dev] handling multiple output files on galaxy.

4 Jul 2010

      Hi Galaxy team,

I would like to create output files of my tool based on the input request. I
referred to the contents at
http://bitbucket.org/galaxy/galaxy-central/wiki/ToolsMultipleOutput. Here it
doesn't mention how I can handle if I have more conditional statements.

<tool id="example_tool" name="Multiple output" description="example">
    <command>example_tool.sh </command>
    <inputs>
       ...
       <conditional name="condition1">
          ...
        <conditional name="condition2">
            .....

            <param name="format" type="select" label="Output format">
                            <option value="bed">BED format</option>
                            <option value="sam">SAM format</option>
                        </param>

        </condition>
           ...
       </condition>
       ...
    </inputs>
    ...
    <outputs>

        <data format="bed" name="output1" >
            <filter>condition1 condition2['format'] == "bed"</filter>   ##
How I can give multiple conditions.
        </data>

        <data format="sam" name="output2" >
            <filter>condition1 condition2['format'] == "sam"</filter>
        </data>

    </outputs>
</tool>

Many thanks in advance,
Vipin T S

[galaxy-dev] handling multiple output files on galaxy.

Vipin TS