Hi there
I'm trying to add a wrapper for the vcftools vcf-consensus tool. There is an existing tool collection for vcftools in tools-devteam, so I'm add it there. Wrapper is at:
https://github.com/pvanheus/tools-devteam/tree/master/tool_collections/vcfto...
I tested this using:
planemo conda_install . planemo serve --conda_prefix /home/pvh/miniconda2 --con da_dependency_resolution
When the tool executes I get the error:
Fatal error: Exit code 2 () Can't locate Vcf.pm in @INC
Which implies that the PERL5LIB is not being set correctly when the tool runs.
Using planemo test gives me:
No tests were executed - see Galaxy output for details.
Strangely enough on the pull request the Travis test passes ( https://github.com/galaxyproject/tools-devteam/pull/402).
Any idea how to fix this?
Thanks! Peter