Error when clicking on published workflows
URL: http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test Module paste.exceptions.errormiddleware:143 in __call__
<http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> environ, self.app) Module paste.wsgilib:539 in intercept_output <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return self.application(environ, start_response) Module galaxy.web.framework.middleware.remoteuser:111 in __call__ <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return self.app( environ, start_response ) Module paste.httpexceptions:632 in __call__ <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> body = method( trans, **kwargs ) Module galaxy.web.controllers.workflow:221 in display_by_username_and_slug <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> user_item_rating = user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings ) Module galaxy.web.framework:718 in fill_template_mako <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return template.render( **data ) Module mako.template:296 in render <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> callable_(context, *args, **kwargs) Module _base_panels_mako:100 in render_body <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(self.center_panel())) Module _display_base_mako:219 in render_center_panel <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(self.render_content())) Module _display_base_mako:179 in render_render_content <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(self.render_item( item, item_data ))) Module workflow_display_mako:136 in render_render_item <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(do_inputs( tool.inputs, step.state.inputs, "", step ))) Module workflow_display_mako:91 in do_inputs <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:216 in render_do_inputs <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(do_inputs( input.inputs, repeat_values[ i ], prefix + input.name + "_" + str(index) + "|", step, other_values ))) Module workflow_display_mako:181 in do_inputs <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:246 in render_do_inputs <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(row_for_param( input, values[ input.name ], other_values, prefix, step ))) Module workflow_display_mako:179 in row_for_param <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return render_row_for_param(context,param,value,other_values,prefix,step) Module workflow_display_mako:300 in render_row_for_param <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> if isinstance( param, DataToolParameter ): TypeError: isinstance() arg 2 must be a class, type, or tuple of classes and types
Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny@illumina.com<mailto:ichorny@illumina.com> Website: www.illumina.com<http://www.illumina.com>
I pull the latest version of galaxy central and I still get this error when clicking on published workflows. Any thoughts? Error - <type 'exceptions.TypeError'>: isinstance() arg 2 must be a class, type, or tuple of classes and types and below. Best, Ilya From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Chorny, Ilya Sent: Friday, November 04, 2011 2:45 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] Error when clicking on published workflows URL: http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test Module paste.exceptions.errormiddleware:143 in __call__
<http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> environ, self.app) Module paste.wsgilib:539 in intercept_output <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return self.application(environ, start_response) Module galaxy.web.framework.middleware.remoteuser:111 in __call__ <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return self.app( environ, start_response ) Module paste.httpexceptions:632 in __call__ <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> body = method( trans, **kwargs ) Module galaxy.web.controllers.workflow:221 in display_by_username_and_slug <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> user_item_rating = user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings ) Module galaxy.web.framework:718 in fill_template_mako <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return template.render( **data ) Module mako.template:296 in render <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> callable_(context, *args, **kwargs) Module _base_panels_mako:100 in render_body <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(self.center_panel())) Module _display_base_mako:219 in render_center_panel <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(self.render_content())) Module _display_base_mako:179 in render_render_content <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(self.render_item( item, item_data ))) Module workflow_display_mako:136 in render_render_item <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(do_inputs( tool.inputs, step.state.inputs, "", step ))) Module workflow_display_mako:91 in do_inputs <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:216 in render_do_inputs <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(do_inputs( input.inputs, repeat_values[ i ], prefix + input.name + "_" + str(index) + "|", step, other_values ))) Module workflow_display_mako:181 in do_inputs <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:246 in render_do_inputs <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> __M_writer(unicode(row_for_param( input, values[ input.name ], other_values, prefix, step ))) Module workflow_display_mako:179 in row_for_param <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> return render_row_for_param(context,param,value,other_values,prefix,step) Module workflow_display_mako:300 in render_row_for_param <http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test> if isinstance( param, DataToolParameter ): TypeError: isinstance() arg 2 must be a class, type, or tuple of classes and types
Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny@illumina.com<mailto:ichorny@illumina.com> Website: www.illumina.com<http://www.illumina.com>
I think this is particular to this individual workflow (or perhaps a tool you're using within it). Anything special about it, or the tools within? -Dannon On Nov 7, 2011, at 11:54 AM, Chorny, Ilya wrote:
I pull the latest version of galaxy central and I still get this error when clicking on published workflows. Any thoughts?
Error - <type 'exceptions.TypeError'>: isinstance() arg 2 must be a class, type, or tuple of classes and types and below.
Best,
Ilya
From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Chorny, Ilya Sent: Friday, November 04, 2011 2:45 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] Error when clicking on published workflows
URL: http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test Module paste.exceptions.errormiddleware:143 in __call__
app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.middleware.remoteuser:111 in __call__ return self.app( environ, start_response ) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.controllers.workflow:221 in display_by_username_and_slug user_item_rating = user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings ) Module galaxy.web.framework:718 in fill_template_mako return template.render( **data ) Module mako.template:296 in render return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template callable_(context, *args, **kwargs) Module _base_panels_mako:100 in render_body __M_writer(unicode(self.center_panel())) Module _display_base_mako:219 in render_center_panel __M_writer(unicode(self.render_content())) Module _display_base_mako:179 in render_render_content __M_writer(unicode(self.render_item( item, item_data ))) Module workflow_display_mako:136 in render_render_item __M_writer(unicode(do_inputs( tool.inputs, step.state.inputs, "", step ))) Module workflow_display_mako:91 in do_inputs return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:216 in render_do_inputs __M_writer(unicode(do_inputs( input.inputs, repeat_values[ i ], prefix + input.name + "_" + str(index) + "|",step, other_values ))) Module workflow_display_mako:181 in do_inputs return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:246 in render_do_inputs __M_writer(unicode(row_for_param( input, values[ input.name ], other_values, prefix, step ))) Module workflow_display_mako:179 in row_for_param return render_row_for_param(context,param,value,other_values,prefix,step) Module workflow_display_mako:300 in render_row_for_param if isinstance( param, DataToolParameter ): TypeError: isinstance() arg 2 must be a class, type, or tuple of classes and types
Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny@illumina.com Website: www.illumina.com
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Dannon, I just cloned a fresh version of galaxy-central. I create a workflow using just fastqc or groomer. I can run the work flow,etc. But when I publish it and try to run it from the published workflows page I get that error. Ilya -----Original Message----- From: Dannon Baker [mailto:dannonbaker@me.com] Sent: Monday, November 07, 2011 9:00 AM To: Chorny, Ilya Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Error when clicking on published workflows I think this is particular to this individual workflow (or perhaps a tool you're using within it). Anything special about it, or the tools within? -Dannon On Nov 7, 2011, at 11:54 AM, Chorny, Ilya wrote:
I pull the latest version of galaxy central and I still get this error when clicking on published workflows. Any thoughts?
Error - <type 'exceptions.TypeError'>: isinstance() arg 2 must be a class, type, or tuple of classes and types and below.
Best,
Ilya
From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Chorny, Ilya Sent: Friday, November 04, 2011 2:45 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] Error when clicking on published workflows
URL: http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test Module paste.exceptions.errormiddleware:143 in __call__
app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.middleware.remoteuser:111 in __call__ return self.app( environ, start_response ) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.controllers.workflow:221 in display_by_username_and_slug user_item_rating = user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings ) Module galaxy.web.framework:718 in fill_template_mako return template.render( **data ) Module mako.template:296 in render return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template callable_(context, *args, **kwargs) Module _base_panels_mako:100 in render_body __M_writer(unicode(self.center_panel())) Module _display_base_mako:219 in render_center_panel __M_writer(unicode(self.render_content())) Module _display_base_mako:179 in render_render_content __M_writer(unicode(self.render_item( item, item_data ))) Module workflow_display_mako:136 in render_render_item __M_writer(unicode(do_inputs( tool.inputs, step.state.inputs, "", step ))) Module workflow_display_mako:91 in do_inputs return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:216 in render_do_inputs __M_writer(unicode(do_inputs( input.inputs, repeat_values[ i ], prefix + input.name + "_" + str(index) + "|",step, other_values ))) Module workflow_display_mako:181 in do_inputs return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:246 in render_do_inputs __M_writer(unicode(row_for_param( input, values[ input.name ], other_values, prefix, step ))) Module workflow_display_mako:179 in row_for_param return render_row_for_param(context,param,value,other_values,prefix,step) Module workflow_display_mako:300 in render_row_for_param if isinstance( param, DataToolParameter ): TypeError: isinstance() arg 2 must be a class, type, or tuple of classes and types
Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny@illumina.com Website: www.illumina.com
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Yep, I'm able to reproduce it now, should have a resolution shortly. Thanks! On Nov 7, 2011, at 12:24 PM, Chorny, Ilya wrote:
Dannon,
I just cloned a fresh version of galaxy-central. I create a workflow using just fastqc or groomer. I can run the work flow,etc. But when I publish it and try to run it from the published workflows page I get that error.
Ilya
-----Original Message----- From: Dannon Baker [mailto:dannonbaker@me.com] Sent: Monday, November 07, 2011 9:00 AM To: Chorny, Ilya Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Error when clicking on published workflows
I think this is particular to this individual workflow (or perhaps a tool you're using within it). Anything special about it, or the tools within?
-Dannon
On Nov 7, 2011, at 11:54 AM, Chorny, Ilya wrote:
I pull the latest version of galaxy central and I still get this error when clicking on published workflows. Any thoughts?
Error - <type 'exceptions.TypeError'>: isinstance() arg 2 must be a class, type, or tuple of classes and types and below.
Best,
Ilya
From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Chorny, Ilya Sent: Friday, November 04, 2011 2:45 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] Error when clicking on published workflows
URL: http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test Module paste.exceptions.errormiddleware:143 in __call__
app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.middleware.remoteuser:111 in __call__ return self.app( environ, start_response ) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.controllers.workflow:221 in display_by_username_and_slug user_item_rating = user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings ) Module galaxy.web.framework:718 in fill_template_mako return template.render( **data ) Module mako.template:296 in render return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template callable_(context, *args, **kwargs) Module _base_panels_mako:100 in render_body __M_writer(unicode(self.center_panel())) Module _display_base_mako:219 in render_center_panel __M_writer(unicode(self.render_content())) Module _display_base_mako:179 in render_render_content __M_writer(unicode(self.render_item( item, item_data ))) Module workflow_display_mako:136 in render_render_item __M_writer(unicode(do_inputs( tool.inputs, step.state.inputs, "", step ))) Module workflow_display_mako:91 in do_inputs return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:216 in render_do_inputs __M_writer(unicode(do_inputs( input.inputs, repeat_values[ i ], prefix + input.name + "_" + str(index) + "|",step, other_values ))) Module workflow_display_mako:181 in do_inputs return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:246 in render_do_inputs __M_writer(unicode(row_for_param( input, values[ input.name ], other_values, prefix, step ))) Module workflow_display_mako:179 in row_for_param return render_row_for_param(context,param,value,other_values,prefix,step) Module workflow_display_mako:300 in render_row_for_param if isinstance( param, DataToolParameter ): TypeError: isinstance() arg 2 must be a class, type, or tuple of classes and types
Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny@illumina.com Website: www.illumina.com
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Fixed in 0cdd7bb67d95, thanks for reporting the error. -Dannon On Nov 7, 2011, at 12:24 PM, Chorny, Ilya wrote:
Dannon,
I just cloned a fresh version of galaxy-central. I create a workflow using just fastqc or groomer. I can run the work flow,etc. But when I publish it and try to run it from the published workflows page I get that error.
Ilya
-----Original Message----- From: Dannon Baker [mailto:dannonbaker@me.com] Sent: Monday, November 07, 2011 9:00 AM To: Chorny, Ilya Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Error when clicking on published workflows
I think this is particular to this individual workflow (or perhaps a tool you're using within it). Anything special about it, or the tools within?
-Dannon
On Nov 7, 2011, at 11:54 AM, Chorny, Ilya wrote:
I pull the latest version of galaxy central and I still get this error when clicking on published workflows. Any thoughts?
Error - <type 'exceptions.TypeError'>: isinstance() arg 2 must be a class, type, or tuple of classes and types and below.
Best,
Ilya
From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Chorny, Ilya Sent: Friday, November 04, 2011 2:45 PM To: galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] Error when clicking on published workflows
URL: http://ussd-dev-swim02.illumina.com/galaxy2/u/ichorny/w/test Module paste.exceptions.errormiddleware:143 in __call__
app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.middleware.remoteuser:111 in __call__ return self.app( environ, start_response ) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.controllers.workflow:221 in display_by_username_and_slug user_item_rating = user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings ) Module galaxy.web.framework:718 in fill_template_mako return template.render( **data ) Module mako.template:296 in render return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template callable_(context, *args, **kwargs) Module _base_panels_mako:100 in render_body __M_writer(unicode(self.center_panel())) Module _display_base_mako:219 in render_center_panel __M_writer(unicode(self.render_content())) Module _display_base_mako:179 in render_render_content __M_writer(unicode(self.render_item( item, item_data ))) Module workflow_display_mako:136 in render_render_item __M_writer(unicode(do_inputs( tool.inputs, step.state.inputs, "", step ))) Module workflow_display_mako:91 in do_inputs return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:216 in render_do_inputs __M_writer(unicode(do_inputs( input.inputs, repeat_values[ i ], prefix + input.name + "_" + str(index) + "|",step, other_values ))) Module workflow_display_mako:181 in do_inputs return render_do_inputs(context,inputs,values,prefix,step,other_values) Module workflow_display_mako:246 in render_do_inputs __M_writer(unicode(row_for_param( input, values[ input.name ], other_values, prefix, step ))) Module workflow_display_mako:179 in row_for_param return render_row_for_param(context,param,value,other_values,prefix,step) Module workflow_display_mako:300 in render_row_for_param if isinstance( param, DataToolParameter ): TypeError: isinstance() arg 2 must be a class, type, or tuple of classes and types
Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny@illumina.com Website: www.illumina.com
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participants (2)
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Chorny, Ilya -
Dannon Baker