details: http://www.bx.psu.edu/hg/galaxy/rev/46bbe610288a changeset: 2442:46bbe610288a user: Dan Blankenberg dan@bx.psu.edu date: Wed Jun 10 11:58:21 2009 -0400 description: Fix missing split/join char in Join tool when filling nonjoined columns.

1 file(s) affected in this change:

tools/filters/join.py

diffs (20 lines):

diff -r c0aa8af62124 -r 46bbe610288a tools/filters/join.py --- a/tools/filters/join.py Tue Jun 09 15:03:04 2009 -0400 +++ b/tools/filters/join.py Wed Jun 10 11:58:21 2009 -0400 @@ -288,12 +288,14 @@ if not written and keep_unmatched: out.write( fill_empty_columns( line1.rstrip( '\r\n' ), split, fill_options.file1_columns ) ) if fill_options: - out.write( fill_empty_columns( "", split, fill_options.file2_columns ) ) + if fill_options.file2_columns: + out.write( "%s%s" % ( split, fill_empty_columns( "", split, fill_options.file2_columns ) ) ) out.write( "\n" ) elif keep_partial: out.write( fill_empty_columns( line1.rstrip( '\r\n' ), split, fill_options.file1_columns ) ) if fill_options: - out.write( fill_empty_columns( "", split, fill_options.file2_columns ) ) + if fill_options.file2_columns: + out.write( "%s%s" % ( split, fill_empty_columns( "", split, fill_options.file2_columns ) ) ) out.write( "\n" ) out.close()