Request for pulling the updated FASTQ (de-)interlacer tool
Dear Galaxy team, Please consider pulling these changes I made to the interlacer/de-interlacer tools into the main Galaxy repository: https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36 While the tools were handling mate pairs fine, I now added the ability to also keep single reads (reads that miss their mate) in a separate file. The functional tests were updated and pass. Thanks, Florent
Hello Florent, I created a ticket to better track this request. I do not find that the changes were added yet (or that any decision about them was made), but if so and I just missed it, we can update/close the bitbucket ticket. https://bitbucket.org/galaxy/galaxy-central/issue/636 Thanks for contributing to Galaxy! Jen Galaxy team On 5/17/11 12:47 AM, Florent Angly wrote:
Dear Galaxy team, Please consider pulling these changes I made to the interlacer/de-interlacer tools into the main Galaxy repository: https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36 While the tools were handling mate pairs fine, I now added the ability to also keep single reads (reads that miss their mate) in a separate file. The functional tests were updated and pass. Thanks, Florent
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-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
The tool was committed in June :) -K On Fri, Aug 5, 2011 at 4:13 PM, Jennifer Jackson <jen@bx.psu.edu> wrote:
Hello Florent,
I created a ticket to better track this request. I do not find that the changes were added yet (or that any decision about them was made), but if so and I just missed it, we can update/close the bitbucket ticket. https://bitbucket.org/galaxy/**galaxy-central/issue/636<https://bitbucket.org/galaxy/galaxy-central/issue/636>
Thanks for contributing to Galaxy!
Jen Galaxy team
On 5/17/11 12:47 AM, Florent Angly wrote:
Dear Galaxy team, Please consider pulling these changes I made to the interlacer/de-interlacer tools into the main Galaxy repository: https://bitbucket.org/fangly/**galaxy-central/changeset/**7f7ec8f05d36<https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36> While the tools were handling mate pairs fine, I now added the ability to also keep single reads (reads that miss their mate) in a separate file. The functional tests were updated and pass. Thanks, Florent
______________________________**_____________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/**Support <http://galaxyproject.org/Support>
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Great, thanks Kanwei! The bitbucket issue is now set to resolved. Jen On 8/5/11 1:29 PM, Kanwei Li wrote:
The tool was committed in June :)
-K
On Fri, Aug 5, 2011 at 4:13 PM, Jennifer Jackson <jen@bx.psu.edu <mailto:jen@bx.psu.edu>> wrote:
Hello Florent,
I created a ticket to better track this request. I do not find that the changes were added yet (or that any decision about them was made), but if so and I just missed it, we can update/close the bitbucket ticket. https://bitbucket.org/galaxy/__galaxy-central/issue/636 <https://bitbucket.org/galaxy/galaxy-central/issue/636>
Thanks for contributing to Galaxy!
Jen Galaxy team
On 5/17/11 12:47 AM, Florent Angly wrote:
Dear Galaxy team, Please consider pulling these changes I made to the interlacer/de-interlacer tools into the main Galaxy repository: https://bitbucket.org/fangly/__galaxy-central/changeset/__7f7ec8f05d36 <https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36> While the tools were handling mate pairs fine, I now added the ability to also keep single reads (reads that miss their mate) in a separate file. The functional tests were updated and pass. Thanks, Florent
_____________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/__Support <http://galaxyproject.org/Support>
_____________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
Yes, it is all fine and dandy! Thanks Jen and Kanwei, Florent On 06/08/11 06:39, Jennifer Jackson wrote:
Great, thanks Kanwei! The bitbucket issue is now set to resolved. Jen
On 8/5/11 1:29 PM, Kanwei Li wrote:
The tool was committed in June :)
-K
On Fri, Aug 5, 2011 at 4:13 PM, Jennifer Jackson <jen@bx.psu.edu <mailto:jen@bx.psu.edu>> wrote:
Hello Florent,
I created a ticket to better track this request. I do not find that the changes were added yet (or that any decision about them was made), but if so and I just missed it, we can update/close the bitbucket ticket. https://bitbucket.org/galaxy/__galaxy-central/issue/636 <https://bitbucket.org/galaxy/galaxy-central/issue/636>
Thanks for contributing to Galaxy!
Jen Galaxy team
On 5/17/11 12:47 AM, Florent Angly wrote:
Dear Galaxy team, Please consider pulling these changes I made to the interlacer/de-interlacer tools into the main Galaxy repository:
https://bitbucket.org/fangly/__galaxy-central/changeset/__7f7ec8f05d36 <https://bitbucket.org/fangly/galaxy-central/changeset/7f7ec8f05d36> While the tools were handling mate pairs fine, I now added the ability to also keep single reads (reads that miss their mate) in a separate file. The functional tests were updated and pass. Thanks, Florent
_____________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/__Support <http://galaxyproject.org/Support>
_____________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (3)
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Florent Angly -
Jennifer Jackson -
Kanwei Li