Hi Dan:

Thanks I have installed these test data managers...

I miss some of the features of the old system

e.g. lookup by name at ucsc or ncbi, automatic building of a specified set of indices after download.

Are those cool features really gone now or did i miss something?

The second dialog (choose the source for the reference genome) is not at all clear.

is this going to reorder what has been downloaded?

Is there a reason not to always use GATK - ( i think that means, by chr size, descending)?

GATK is the only tool I know that is picky about reference order.

Brad

________________________________ From: Daniel Blankenberg dan@bx.psu.edu Sent: Wednesday, February 26, 2014 2:58 PM To: Langhorst, Brad Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] latest stable data management interface

Hi Brad,

Galaxy doesn't come with any Data Managers in the distribution, so you'll need to install them from a toolshed. Here is the Data Manager category with with is currently available in the test toolshed.: http://testtoolshed.g2.bx.psu.edu/repository/browse_repositories_in_category...

In the future we'll make the fact that there aren't any Data Managers installed more obvious. Please let us know if you encounter further difficulties.

Thanks for using Galaxy,

Dan

On Feb 26, 2014, at 2:47 PM, Langhorst, Brad <Langhorst@neb.commailto:Langhorst@neb.com> wrote:

When i click on the manage local data link i only see this:

<pastedImage.png>

none of which is clickable.

?Am I doing something silly?

What am i missing?

Brad ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

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