I'm sorry,
I forgot to add the error log:
/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267:
UserWarning: Unknown distribution option: 'setup_requires'
warnings.warn(msg)
/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267:
UserWarning: Unknown distribution option: 'install_requires'
warnings.warn(msg)
/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267:
UserWarning: Unknown distribution option: 'zip_safe'
warnings.warn(msg)
Warning: Assuming default configuration (numexpr/tests/{setup_tests,setup}.py was not
found)Traceback (most recent call last):
File "setup.py", line 227, in <module>
setup_package()
File "setup.py", line 223, in setup_package
setup(**metadata)
File
"/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/core.py",
line 169, in setup
return old_setup(**new_attr)
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/core.py",
line 151, in setup
dist.run_commands()
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py",
line 953, in run_commands
self.run_command(cmd)
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py",
line 972, in run_command
cmd_obj.run()
File
"/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/install.py",
line 62, in run
r = self.setuptools_run()
File
"/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/install.py",
line 56, in setuptools_run
self.do_egg_install()
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/install.py",
line 109, in do_egg_install
self.run_command('bdist_egg')
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/cmd.py",
line 326, in run_command
self.distribution.run_command(command)
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py",
line 972, in run_command
cmd_obj.run()
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/bdist_egg.py",
line 151, in run
self.run_command("egg_info")
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/cmd.py",
line 326, in run_command
self.distribution.run_command(command)
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py",
line 972, in run_command
cmd_obj.run()
File
"/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/egg_info.py",
line 11, in run
_egg_info.run(self)
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py",
line 180, in run
self.find_sources()
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py",
line 207, in find_sources
mm.run()
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py",
line 291, in run
self.add_defaults()
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py",
line 320, in add_defaults
sdist.add_defaults(self)
File
"/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/sdist.py",
line 124, in add_defaults
if not self.distribution.include_package_data:
AttributeError: NumpyDistribution instance has no attribute
'include_package_data'
Thank you very much,
Lucille Delisle, PhD
PostDoc Duboule Lab
Laboratory of Developmental Genomics
EPFL SV ISREC UPDUB
SV 2843
Station 19
CH-1015 Lausanne
Tel : +41 21 693 97 08
________________________________
De : galaxy-dev <galaxy-dev-bounces(a)lists.galaxyproject.org> de la part de Delisle
Lucille <lucille.delisle(a)epfl.ch>
Envoyé : lundi 24 juillet 2017 11:58
À : galaxy-dev(a)lists.galaxyproject.org
Objet : [galaxy-dev] Creating a tool dependency packages
Dear Galaxy list,
I do not know if it is the right place to ask my question. I would like to create a tool
dependency package for numexpr (a python library).
I tried to do it taking examples from different tool dependency packages from iuc for
example.
I added my repository to the testtoolshed but when I tried to install it. The directory
lib/python of my tool is empty.
My repository is :
package_python_2_7_numexpr_2_6_2<https://testtoolshed.g2.bx.psu.edu/re...
The big difference I see between the one from iuc and mine is the url:
For example, for pybigwig, the URL is :
https://pypi.python.org/packages/source/p/pyBigWig/pyBigWig-0.1.9.tar.gz
For my library numexpr I could not find such a url so I put the one I thought would be the
good one:
https://pypi.python.org/packages/31/43/7777ab9535c416faabd1865453389260fd...
Thank you very much for your help,
Lucille Delisle, PhD
PostDoc Duboule Lab
Laboratory of Developmental Genomics
EPFL SV ISREC UPDUB
SV 2843
Station 19
CH-1015 Lausanne
Tel : +41 21 693 97 08