You can overwrite your copy of the Cuffdiff wrapper at tools/ngs_rna/cuffdiff_wrapper.xml with the new version: https://bitbucket.org/galaxy/galaxy-central/raw/48fad71361b3075c85c7d365dd52... Best, J. On Sep 16, 2013, at 5:36 PM, Matthew Paul wrote:

Hey Galaxy,

I am trying to use CuffDIff with replicate analysis on a local instance. I saw that Jeremy Goecks had a solution to this problem: http://user.list.galaxyproject.org/Cuffdiff-changes-tt4655893.html#a4655901. Could I see/use this source code please? I can't really wait until the next update.

Thanks, Matt Paul ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

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